Stem-loop ssp-MIR408a

Accession

MI0018197

Description

Saccharum sp. ssp-MIR408a precursor miRNA

Gene family

MIPF0000102; MIR408

Literature search

1 open access papers mention ssp-MIR408a
(1 sentences)

Sequence

gagacagggaugaggcagagcaugggaugaggccaucaacaaaauuuccaauuucuguccuccgcuaggccgcuacugcauuucuguuugcuugcucacaaaacggagggauuugugagaguuaucaggcagaaagaacaaagaaggugccucccuggugaaguggugauggccugaccugagacggcugagagcucagcugguguccuguuguugcuuccucccCUGCACUGCCUCUUCCCUGGCuc
(((.((((((.(((((((.(((.((((.(((((...(((((..................(((...(((((((.((((((.((((((((((....((((((((.(.....).))))))))......)))))))))).............(((.....)))...)))))).)))))))....))).(((((((....)))))))......)))))..))))).)))).))).))))))).)))))).)))

Structure

   a      u       a   u    u     cau     -------aaauuuccaauuucuguc   -cgc       c      --------------------------a          --cuug        a g 
gag caggga gaggcag gca ggga gaggc   caaca                         cuc    uaggccg uacugc                           uuucuguuug      cucacaaa c g
||| |||||| ||||||| ||| |||| |||||   |||||                         |||    ||||||| ||||||                           ||||||||||      |||||||| | a
cuC GUCCCU CUCCGUC CGU cccu cuucg   guugu                         gag    guccggu guggug                           aaagacggac      gaguguuu g g
   G      U       A   C    c     -uu     ccuguggucgacucgagagucggca   ucca       a      aaguggucccuccguggaagaaacaag          uauuga        a g 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssp-miR408a

• Accession: MIMAT0020297
• Description: Saccharum sp. ssp-miR408a mature miRNA
• Sequence: 226 - CUGCACUGCCUCUUCCCUGGC - 246
• Evidence: not_experimental

References

1. PubMed ID: 21092324
   Identification and expression analysis of microRNAs and targets in the biofuel crop sugarcane
   Zanca AS, Vicentini R, Ortiz-Morea FA, Del Bem LE, da Silva MJ, Vincentz M, Nogueira FT
   BMC Plant Biol (2010) 10:260