miRBase entry: bdi-MIR395e

Stem-loop bdi-MIR395e


Accession
MI0018220
Description
Brachypodium distachyon bdi-MIR395e precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
3 open access papers mention bdi-MIR395e
(33 sentences)

Sequence

guugguugucaccuggaGUUCUCCUCAAAUCACUUCAGUagcuagcuagcuugugccuccuuguugcauugccacuguuuuauaagugugcuuggggccagagagcugugcacagUGAAGUGUUUGGGGGAACUCuggguggcaaccagc
((((((((((((((((((((((((.((((.(((((((.(.(((((((..((.(.(((.((.....(((....((((........)))))))..))))))))..))))).))..).)))))))))))))))))))))))))))))))))))

Structure
                        U    U       G -a  -     ag  u u   u  uuguu   uugc    guu 
guugguugucaccuggaGUUCUCC CAAA CACUUCA U  gc uagcu  cu g gcc cc     gca    cacu   u
|||||||||||||||||||||||| |||| ||||||| |  || |||||  || | ||| ||     |||    ||||    
cgaccaacgguggguCUCAAGGGG GUUU GUGAAGU a  cg gucga  ga c cgg gg     cgu    guga   u
                        -    -       g ca  u     ga  - -   -  ---uu   ----    aua 


Annotation confidence Not enough data
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Genome context
5: 25455195-25455344 [+]
Clustered miRNAs
10 other miRNAs are < 10 kb from bdi-MIR395e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bdi-miR395e-3p

Accession MIMAT0020745
Description Brachypodium distachyon bdi-miR395e-3p mature miRNA
Sequence 116 - UGAAGUGUUUGGGGGAACUC - 135
Evidence experimental
Illumina [1-2]

Mature bdi-miR395e-5p

Accession MIMAT0027089
Description Brachypodium distachyon bdi-miR395e-5p mature miRNA
Sequence 18 - GUUCUCCUCAAAUCACUUCAGU - 39
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 19772667
    Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
    Zhang J, Xu Y, Huan Q, Chong K
    BMC Genomics (2009) 10:449

  2. PubMed ID: 23264558
    Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
    "Mol Plant (2013) 6:423-443