Stem-loop sequence bdi-MIR395e

Accession

MI0018220 (change log)

Description

Brachypodium distachyon miR395e stem-loop

Gene family

MIPF0000016; MIR395

Literature search

3 open access papers mention bdi-MIR395e
(33 sentences)

Stem-loop

                ug         u    u       g -a  -     ag  u u   u  uuguu   uugc    guu 
5' guugguugucacc  gaguucucc caaa cacuuca u  gc uagcu  cu g gcc cc     gca    cacu   u
   |||||||||||||  ||||||||| |||| ||||||| |  || |||||  || | ||| ||     |||    ||||    
3' cgaccaacggugg  cucaagggg guuu gugaagu a  cg gucga  ga c cgg gg     cgu    guga   u
                gu         -    -       g ca  u     ga  - -   -  ---uu   ----    aua 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Bd21; GCA_000005505.1): 5: 25455195-25455344 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bdi-MIR395e

• bdi-MIR395e: 5: 25455195-25455344 [+]
• bdi-MIR395f: 5: 25455426-25455521 [+]
• bdi-MIR395g: 5: 25455723-25455811 [+]
• bdi-MIR395h: 5: 25455882-25455957 [+]
• bdi-MIR395c: 5: 25455997-25456122 [+]
• bdi-MIR395j: 5: 25456151-25456238 [+]
• bdi-MIR395k: 5: 25456290-25456375 [+]
• bdi-MIR395p: 5: 25456430-25456518 [+]
• bdi-MIR395l: 5: 25456562-25456657 [+]
• bdi-MIR395q: 5: 25456843-25456926 [+]
• bdi-MIR395n: 5: 25457116-25457205 [+]

Database links

• miRBase Tracker:MI0018220

Mature sequence bdi-miR395e-5p

• Accession: MIMAT0027089
• Sequence: 18 - guucuccucaaaucacuucagu - 39
• Evidence: experimental; Illumina [2]

Mature sequence bdi-miR395e-3p

• Accession: MIMAT0020745
• Sequence: 116 - ugaaguguuugggggaacuc - 135
• Evidence: experimental; Illumina [1-2]

References

1. PMID:19772667 "Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response" Zhang J, Xu Y, Huan Q, Chong K BMC Genomics. 10:449(2009).
2. PMID:23264558 "Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon" Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E Mol Plant. 6:423-443(2013).