miRBase entry: mtr-MIR5206a

Stem-loop mtr-MIR5206a


Accession
MI0018244
Description
Medicago truncatula mtr-MIR5206a precursor miRNA
Gene family
MIPF0001288; MIR5037


Sequence

aaggccuucaguaacccucaaaggcuuccauggaaucauagcauggcuuacggucagauuaaucauauauuugacuauagugaugugaaaaucAUGGGAUCCUGUUGGUGGGUUACugaaagcuuu
(((((.((((((((((((((((((.((((((((.......((((.(((...((((((((.........))))))))..))).)))).....)))))))).))).)))).))))))))))).)))))

Structure
     c           -    -   c        aaucaua    g   uac        uaa 
aaggc uucaguaaccc ucaa agg uuccaugg       gcau gcu   ggucagau   u
||||| ||||||||||| |||| ||| ||||||||       |||| |||   ||||||||   c
uuucg aaguCAUUGGG GGUU UCC AGGGUAcu       ugua uga   ucaguuua   a
     a           U    G   U        --aaaag    g   -ua        uau 


Annotation confidence Not enough data
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Genome context
chr7: 23934943-23935068 [-]

Database links

Mature mtr-miR5206a

Accession MIMAT0021137
Description Medicago truncatula mtr-miR5206a mature miRNA
Sequence 94 - AUGGGAUCCUGUUGGUGGGUUAC - 116
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010

  2. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553