miRBase entry: mtr-MIR2592t

Stem-loop mtr-MIR2592t


Accession
MI0018255
Description
Medicago truncatula mtr-MIR2592t precursor miRNA
Gene family
MIPF0000815; MIR2592

Literature search
1 open access papers mention mtr-MIR2592t
(2 sentences)

Sequence

cuugucaaaCAACAGGACUCAAGCAUUUCGCaagcaccucauguuucuccuuugaaaauauuaaauuuuuguuaugcugguuuagaugaagguauuaagugucaaggauugaaccucaauucgguggcacuugaauaccaucaucuaaagcaagccucacaaaaauuuauuauuuucaaagggaaaacaugagguguuuggcgaaaugcuugaguccuguuauuuugcaggu
(((((.(((.((((((((((((((((((((((((((((((((((((.(((((((((((((.(((((((((((...((((.(((((((((.((((((((((((((.(((((((...)))))))..))))))))).))))).))))))))).).)))...))))))))))).))))))))))))).))))))))))))))).))))))))))))))))))))).))).))))).

Structure
-     c   C                     -               c             u           uau   - g         a     -         -a       a 
 cuugu aaa AACAGGACUCAAGCAUUUCGC aagcaccucauguuu uccuuugaaaaua uaaauuuuugu   gcu g uuuagauga gguau uaaguguca  ggauuga  
 ||||| ||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||   ||| | ||||||||| ||||| |||||||||  ||||||| c
 ggacg uuu uuguccugaguucguaaagcg uuuguggaguacaaa gggaaacuuuuau auuuaaaaaca   cga c aaaucuacu ccaua guucacggu  cuuaacu  
u     u   a                     g               a             u           cuc   a g         a     a         gg       c 


Annotation confidence Not enough data
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Genome context
chr3: 35460547-35460778 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from mtr-MIR2592t
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mtr-miR2592t

Accession MIMAT0021149
Description Medicago truncatula mtr-miR2592t mature miRNA
Sequence 10 - CAACAGGACUCAAGCAUUUCGC - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010