miRBase entry: mtr-MIR2592y

Stem-loop mtr-MIR2592y


Accession
MI0018261
Description
Medicago truncatula mtr-MIR2592y precursor miRNA
Gene family
MIPF0000815; MIR2592

Literature search
1 open access papers mention mtr-MIR2592y
(2 sentences)

Sequence

aaaCAACAGGACUCAAGCAUUUCGCaagcaccucauguuucuccuuugaaaauauuaaauuuuuguuaugcugguuuagaugaagguauuaagugucaaggauugaaccucaauucgguggcacuugaauaccaucaucuaaagcaagccucacaaaaauuuauuauuuucaaagggaaaacaugagguguuuggcgaaaugcuugaguccuguuguu
.(((((((((((((((((((((((((((((((((((((((.(((((((((((((.(((((((((((...((((.(((((((((.((((((((((((((.(((((((...)))))))..))))))))).))))).))))))))).).)))...))))))))))).))))))))))))).))))))))))))))).))))))))))))))))))))))))

Structure
a                        -               c             u           uau   - g         a     -         -a       a 
 aaCAACAGGACUCAAGCAUUUCGC aagcaccucauguuu uccuuugaaaaua uaaauuuuugu   gcu g uuuagauga gguau uaaguguca  ggauuga  
 |||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||   ||| | ||||||||| ||||| |||||||||  ||||||| c
 uuguuguccugaguucguaaagcg uuuguggaguacaaa gggaaacuuuuau auuuaaaaaca   cga c aaaucuacu ccaua guucacggu  cuuaacu  
-                        g               a             u           cuc   a g         a     a         gg       c 


Annotation confidence Not enough data
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Genome context
chr7: 14892073-14892290 [-]

Database links

Mature mtr-miR2592y

Accession MIMAT0021155
Description Medicago truncatula mtr-miR2592y mature miRNA
Sequence 4 - CAACAGGACUCAAGCAUUUCGC - 25
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010