Stem-loop mtr-MIR5223

Accession

MI0018286

Description

Medicago truncatula mtr-MIR5223 precursor miRNA

Sequence

acguuugaagCGUGGAAUUUACUUGAAGAUGCugaaaaaaucauggcacgauagauauguaacgugccacgaugauugaauaaauauacugccacauaugaauuaauuggaugagccacgugaacaauuguuuugcuuuuggguggugugaauaauaaaaagauuacgaucaaaacacaaaaacauuguucacguggcucaaccaauuuauucaaacguggccguaaauuuauucaaucauuggggcacauuacucauccaacgugccaugaauuuugaagcaucuuaaauaaauucaacgcaugaaacgug
((((((.(.((((.(((((((....((((((((..((((.((((((((((...(((..((((.(((((.((((((((((((((((.(((.(((((...(((((.((((((.(((((((((((((((((.(((((..(((((((((((.(...........).)))))..))))))....)))))))))))))))))))))).)))))).)))))...))))).))).)))))))))))))))).))))).))))..)))...)))))))))).))))..))))))))...))))))).)))).).)))))).

Structure

-      g a    G       CUUG        ga    a          aua   au    c     a                a   u     aua     u      a                 u     --gc      --     g gaau 
 acguuu a gCGU GAAUUUA    AAGAUGCu  aaaa ucauggcacg   gau  guaa gugcc cgaugauugaauaaau uac gccac   ugaau aauugg ugagccacgugaacaau guuuu    uuuugg  guggu u    a
 |||||| | |||| |||||||    ||||||||  |||| ||||||||||   |||  |||| ||||| |||||||||||||||| ||| |||||   ||||| |||||| ||||||||||||||||| |||||    ||||||  ||||| |    a
 ugcaaa u cgca cuuaaau    uucuacga  uuuu aguaccgugc   cua  cauu cacgg guuacuaacuuauuua aug cggug   acuua uuaacc acucggugcacuuguua caaaa    aaaacu  cauua a    u
g      g a    a       -aaa        ag    a          aac   cu    a     g                a   c     caa     u      a                 -     acac      ag     g aaaa 

Annotation confidence Not enough data

Genome context

chr6: 14469576-14469887 [+]

Mature mtr-miR5223

• Accession: MIMAT0021180
• Description: Medicago truncatula mtr-miR5223 mature miRNA
• Sequence: 11 - CGUGGAAUUUACUUGAAGAUGC - 32
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010