Stem-loop mtr-MIR2592ba

Accession

MI0018304

Description

Medicago truncatula mtr-MIR2592ba precursor miRNA

Gene family

MIPF0000815; MIR2592

Literature search

1 open access papers mention mtr-MIR2592ba
(2 sentences)

Sequence

aaaccugccaaacaacaugacucgagcauuucgcucggcauucauguuuuuccuuugaaaagauuaaauucuuguuAGGCUGGUUUAGAUGAAGGUAuuaggugugaaggaaugaaccucauuucguuggcacuugaauaccagcgucuaaagcacaccuaacaaaaauuuauucuuuucaaaggaaaacaugaaugccgggugaaaugcuugaguccuguuguuuugcagguuu
((((((((.((((((((.((((((((((((((((((((((((((((((((.((((((((((((.((((((.((((((((.((.((((((((..((((((((((((.(((((((((...))))))).)).))))))).)))))..)))))))).))..)))))))).)))))).)))))))))))))))))))))))))))))))))))))))))))).)))))))).))))))))

Structure

        c        u                                u            u      c        -C  G        AA     -       g  -       a 
aaaccugc aaacaaca gacucgagcauuucgcucggcauucauguuuu ccuuugaaaaga uaaauu uuguuAGG  UG UUUAGAUG  GGUAu uaggugu aa ggaauga  
|||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||  || ||||||||  ||||| ||||||| || ||||||| c
uuuggacg uuuguugu cugaguucguaaagugggccguaaguacaaaa ggaaacuuuucu auuuaa aacaaucc  ac aaaucugc  ccaua guucacg uu cuuuacu  
        u        c                                -            u      a        ac  g        ga     a       g  g       c 

Annotation confidence Not enough data

Genome context

chr5: 37815658-37815892 [+]

Mature mtr-miR2592ba

• Accession: MIMAT0021198
• Description: Medicago truncatula mtr-miR2592ba mature miRNA
• Sequence: 77 - AGGCUGGUUUAGAUGAAGGUA - 97
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010