Stem-loop mtr-MIR5237

Accession

MI0018332

Description

Medicago truncatula mtr-MIR5237 precursor miRNA

Sequence

aauauuugaaguucaaacuauuuuuuuuuguuuuuguacgugaugauauaauguuauugaacaacuuucugaacuuucaggccacaagcuggagagauuaaaaagauuguucaaaauauaaugaauauauuggauuguaaaucuucauucauUUCAAAAGAUUUAGUUGGGAUaaauucucgga
..........((((.(((((...(((((((....((...((((.((((((((.(..((((((((((((.(((.(((((.(((.....))).))))).))).)))).))))))))((((((.....))))))).))))))..)).)))).))...)))))))..))))).))))...........

Structure

-aauauuugaa    a     uuu       uuuu  uac    u  --      g ---------------ua        -    c   a     a   c 
           guuc aacua   uuuuuug    ug   guga ga  uauaau u                 uugaacaa cuuu uga cuuuc ggc a
           |||| |||||   |||||||    ||   |||| ||  |||||| |                 |||||||| |||| ||| ||||| ||| c
           UAGG UUGAU   AGAAAAC    ac   uacu cu  auguua g                 aacuuguu gaaa auu gagag ucg a
aggcucuuaaa    G     -UU       -UUu  --u    u  aa      g uuauauaaguaauauaa        a    a   a     g   a 

Annotation confidence Not enough data

Genome context

chr6: 21098236-21098419 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR5237

Mature mtr-miR5237

• Accession: MIMAT0021227
• Description: Medicago truncatula mtr-miR5237 mature miRNA
• Sequence: 153 - UUCAAAAGAUUUAGUUGGGAU - 173
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010