Stem-loop sequence mtr-MIR482

Accession

MI0018337 (change log)

Description

Medicago truncatula miR482 stem-loop

Gene family

MIPF0000403; MIR482

Literature search

3 open access papers mention mtr-MIR482
(13 sentences)

Stem-loop

   ---         a           -ua     ---         --    -c   a 
5'    ggggaaggc uaggcauggga   guagg   gaagaagug  auaa  agc u
      ||||||||| |||||||||||   |||||   |||||||||  ||||  |||  
3'    ucccuuuug auccguacccu   caucc   cuucuucgu  uauu  ucg a
   auc         c           cca     auu         gg    au   u 

Confidence

Annotation confidence: not enough data

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Genome context

Coordinates (JCVI_Mt3.5.2)	Overlapping transcripts
AC235678.1: 65790-65893 [+]	intergenic
contig_59568: 419-522 [+]	intergenic

Clustered miRNAs

< 10kb from mtr-MIR482

• mtr-MIR482: AC235678.1: 65790-65893 [+]
• mtr-MIR2118: AC235678.1: 74374-74532 [-]

Database links

• miRBase Tracker:MI0018337

Mature sequence mtr-miR482-5p

• Accession: MIMAT0021232
• Sequence: 13 - ggcaugggauaguagggaaga - 33
• Evidence: experimental; Illumina [1-2]

Mature sequence mtr-miR482-3p

• Accession: MIMAT0027102
• Sequence: 69 - cuuaccuacaccucccaugcc - 89
• Evidence: experimental; Illumina [2]

References

1. PMID:21571671 "Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis" Devers EA, Branscheid A, May P, Krajinski F Plant Physiol. 156:1990-2010(2011).
2. PMID:23572382 "microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula" Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N Planta. 238:91-105(2013).