miRBase entry: mtr-MIR5243

Stem-loop mtr-MIR5243


Accession
MI0018344
Description
Medicago truncatula mtr-MIR5243 precursor miRNA


Sequence

aaaugcuauaccuacaugguuuuagugcugaaaauggaauucaagugcugaccgacaaaucccucauaaaaguugauggcaaugguugugugagaaugcaugacuuaguucaagacaUGGGCAGAGAAAUCGUGAGGCaggaaucaac
..........(((.(((((((((..((((.(.....(((((((.((.((.((((((....((.(((.......))).)).....)))).)).))...)).)))....))))......).))))..))))))))))))...........

Structure
-aaaugcuaua   a         ag    g -aaaug    ----   a  --g  g  -    -aaau  c   ua 
           ccu caugguuuu  ugcu a      gaau    uca gu   cu ac cgac     cc uca  a
           ||| |||||||||  |||| |      ||||    ||| ||   || || ||||     || |||  a
           GGA GUGCUAAAG  ACGG U      cuug    agu cg   ga ug guug     gg agu  a
caacuaaggaC   -         AG    G acagaa    auuc   a  uaa  g  u    guaac  u   ug 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature mtr-miR5243

Accession MIMAT0021239
Description Medicago truncatula mtr-miR5243 mature miRNA
Sequence 118 - UGGGCAGAGAAAUCGUGAGGC - 138
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010