miRBase entry: mtr-MIR5245

Stem-loop mtr-MIR5245


Accession
MI0018346
Description
Medicago truncatula mtr-MIR5245 precursor miRNA


Sequence

agaaggaucgaCAUCGUAGAACACAGGCAGUAcaaccuggccugugguucugugacgcaccauuauuugc
....((..((...(((((((((((((((((......)).)))))).)))))))))))..)).........

Structure
-----agaa  au  aCA         -      -  UA 
         gg  cg   UCGUAGAAC ACAGGC AG  c
         ||  ||   ||||||||| |||||| ||   
         cc  gc   agugucuug uguccg uc  a
cguuuauua  ac  ---         g      g  ca 


Annotation confidence Not enough data
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Genome context
chr4: 3454832-3454901 [+]

Database links

Mature mtr-miR5245

Accession MIMAT0021241
Description Medicago truncatula mtr-miR5245 mature miRNA
Sequence 12 - CAUCGUAGAACACAGGCAGUA - 32
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010