miRBase entry: mtr-MIR5246

Stem-loop mtr-MIR5246


Accession
MI0018347
Description
Medicago truncatula mtr-MIR5246 precursor miRNA


Sequence

uagguaaaacaacacuugaucuggcuguuuauaauuugaUUGCAGACAGCUUUGAAGGUUuauguuuucu
..((.((((((..((((.....((((((((.((((...)))).))))))))....))))...))))))))

Structure
ua  u      -ac    gaucu        a    u 
  gg aaaaca   acuu     ggcuguuu uaau  
  || ||||||   ||||     |||||||| |||| u
  uc uuuugu   UGGA     UCGACAGA GUUa  
--  -      auU    -AGUU        C    g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr8: 24009245-24009314 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from mtr-MIR5246
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mtr-miR5246

Accession MIMAT0021242
Description Medicago truncatula mtr-miR5246 mature miRNA
Sequence 40 - UUGCAGACAGCUUUGAAGGUU - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010