miRBase entry: mtr-MIR5247

Stem-loop mtr-MIR5247


Accession
MI0018348
Description
Medicago truncatula mtr-MIR5247 precursor miRNA


Sequence

cgcaauuagaGCAGGAGCAAGCAUCUGAUGAcggaaaaaaggguaaaaagauggaaaagaagauggaaaaaaggguaauucuucaauucuaucuguucuguuuuuaguuagaucuguucuuaccaaugcagucuucca
.(((.((.(.(.(((((((.(.((((((((((((((............((((((((..(((((................)))))..)))))))).)))))))....))))))))))))))).))))))).........

Structure
--------c   a  a a C       A C       ----       aaaaggguaaaa        aa     uggaaaa 
         gca uu g G AGGAGCA G AUCUGAU    GAcggaa            agauggaa  gaaga       a
         ||| || | | ||||||| | |||||||    |||||||            ||||||||  |||||        
         cgu aa c c uucuugu c uagauug    uugucuu            ucuaucuu  cuucu       a
accuucuga   -  - - a       - -       auuu       -----------g        aa     uaauggg 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr4: 936777-936914 [+]

Database links

Mature mtr-miR5247

Accession MIMAT0021243
Description Medicago truncatula mtr-miR5247 mature miRNA
Sequence 11 - GCAGGAGCAAGCAUCUGAUGA - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010