miRBase entry: mtr-MIR5248

Stem-loop mtr-MIR5248


Accession
MI0018349
Description
Medicago truncatula mtr-MIR5248 precursor miRNA


Sequence

ucucuuaagcUUUUUAGUUGGCAUGCAUUCAgaacuccaaguccuaaagaaaguuacgcugaccuuuguagagauguuguugaguacugugggggguugccgguagcucuugaaauccuu
..((...((((.....((((((((.(...(((.(((((((((((((..(((.((((...)))).))).))).))).)))..)))).)))....).).)))))))))))...)).......

Structure
-----uc  uua    UUUUA       - G -AUU   a    --   -   -   aa   a    c 
       uc   agcU     GUUGGCA U C    CAg acuc  caa guc cua  gaa guua  
       ||   ||||     ||||||| | |    ||| ||||  ||| ||| |||  ||| |||| g
       ag   ucga     uggccgu g g    guc ugag  guu uag gau  uuu cagu  
uuccuaa  uuc    -----       u g gggu   a    uu   g   a   -g   c    c 


Annotation confidence Not enough data
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Genome context
chr4: 6773762-6773881 [-]

Database links

Mature mtr-miR5248

Accession MIMAT0021244
Description Medicago truncatula mtr-miR5248 mature miRNA
Sequence 11 - UUUUUAGUUGGCAUGCAUUCA - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010