Stem-loop sequence mtr-MIR5249

Accession MI0018350
Description Medicago truncatula miR5249 stem-loop
Stem-loop 
-caugug   a  u        a        -gucuuuuucuuu                     -     a u   g    u    c   u  c      uauuuu    -caauucuca     
       caa ac uagggggc guuuugua             gagggccaaaaucgcaacuuu ggaaa g uag gggc aaaa ugc au aagccu      uaaa          ucga 
       ||| || |||||||| ||||||||             ||||||||||||||||||||| ||||| | ||| |||| |||| ||| || ||||||      ||||          ||| u
       guu ug auccuccg caaaacau             cucccgguuuuagcguugaaa ccuuu c auc cccg uuuu acg ua uucgga      auuu          ggcu 
caaugug   a  u        a        aaaauuaauccau                     a     - u   a    u    c   u  a      --uuuu    aucuacuuuc
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Genome context
Coordinates (Mt3.0) Overlapping transcripts
MtChr4: 593193-593436 [-]
intergenic

Mature sequence mtr-miR5249

Accession MIMAT0021245
Sequence

11 -  

acuuagggggcaguuuuguag

 - 31

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Evidence experimental; Solexa [1]

References

1
PMID:21571671 "Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis" Devers EA, Branscheid A, May P, Krajinski F Plant Physiol. 156:1990-2010(2011).