Stem-loop mtr-MIR5252

Accession

MI0018353

Description

Medicago truncatula mtr-MIR5252 precursor miRNA

Sequence

cgaugacuucagcagccaaggguaguccuccacaguacuuaauuacacuacuUGAGAGCUCACUGAAGUCUGCucuuggacuugccugucuaaac
....((((((((.((((..(((((((........(((......))))))))))..).)))..)))))))).....((((((......))))))..

Structure

---------------------cgau        -c   - aa       ccuccaca   cu 
                         gacuucag  agc c  ggguagu        gua  u
                         ||||||||  ||| |  |||||||        |||   
                         CUGAAGUC  UCG G  Uucauca        cau  a
caaaucuguccguucagguucuCGU        AC   A AG       --------   ua 

Annotation confidence Not enough data

Genome context

chr5: 29454874-29454968 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR5252

Mature mtr-miR5252

• Accession: MIMAT0021248
• Description: Medicago truncatula mtr-miR5252 mature miRNA
• Sequence: 53 - UGAGAGCUCACUGAAGUCUGC - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010