miRBase entry: mtr-MIR2643b

Stem-loop mtr-MIR2643b


Accession
MI0018354
Description
Medicago truncatula mtr-MIR2643b precursor miRNA


Sequence

guccuugaauucUCUAAUCUCUGUUCCCAAUUAcacuuaauccaugaaaagaucaagugagUUUGGGAUCAGAAAUUAGAGAuaucaauacu
....((((..((((((((.((((.((((((...(((((.(((........))).)))))...)))))).)))).))))))))..))))....

Structure
gucc    au        C    U      UUA     a   cau 
    uuga  ucUCUAAU UCUG UCCCAA   cacuu auc   g
    ||||  |||||||| |||| ||||||   ||||| |||    
    aacu  AGAGAUUA AGAC AGGGUU   gugaa uag   a
ucau    au        A    U      Uga     c   aaa 


Annotation confidence Not enough data
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Genome context
chr5: 41256981-41257072 [-]

Database links

Mature mtr-miR2643b-5p

Accession MIMAT0021249
Description Medicago truncatula mtr-miR2643b-5p mature miRNA
Sequence 13 - UCUAAUCUCUGUUCCCAAUUA - 33
Evidence experimental
Illumina [2]

Mature mtr-miR2643b-3p

Accession MIMAT0021250
Description Medicago truncatula mtr-miR2643b-3p mature miRNA
Sequence 62 - UUUGGGAUCAGAAAUUAGAGA - 82
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010

  2. PubMed ID: 21762498
    Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing
    Wang T, Chen L, Zhao M, Tian Q, Zhang WH
    BMC Genomics (2011) 12:367