Stem-loop mtr-MIR2111f

Accession

MI0018360

Description

Medicago truncatula mtr-MIR2111f precursor miRNA

Gene family

MIPF0000754; MIR2111

Literature search

2 open access papers mention mtr-MIR2111f
(8 sentences)

Sequence

uaaggauagggUAAUCUGCAUCCUGAGGUUUAgaacaauaguugguuaauuuccuuaaaaagaaaauagucgcguaauuguuucuaagccuuggagugcagauuaucuuuuccuua
((((((.((((((((((((((.((((((((((((((((((..((((((.((((........)))).))))))..).)))).))))))))))))).)))))))))))))).))))))

Structure

      u              C             -    - gu      a    cuu 
uaagga agggUAAUCUGCAU CUGAGGUUUAgaa caau a  ugguua uuuc   a
|||||| |||||||||||||| ||||||||||||| |||| |  |||||| ||||    
auuccu uucuauuagacgug gguuccgaaucuu guua u  gcugau aaag   a
      u              a             u    a gc      a    aaa 

Annotation confidence Not enough data

Genome context

chr7: 16671474-16671589 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR2111f

Mature mtr-miR2111f

• Accession: MIMAT0021256
• Description: Medicago truncatula mtr-miR2111f mature miRNA
• Sequence: 12 - UAAUCUGCAUCCUGAGGUUUA - 32
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010


2. PubMed ID: 21762498
   Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing
   Wang T, Chen L, Zhao M, Tian Q, Zhang WH
   BMC Genomics (2011) 12:367