Stem-loop mtr-MIR5258

Accession

MI0018362

Description

Medicago truncatula mtr-MIR5258 precursor miRNA

Sequence

gcgaaacaucuuuUCAAGUGACAAGGAAGAUCUUgauaacucaaaugcaaugcaggcaugacuuuaucauuugauaaguuccauaugucacuauucagaauugcauucca
((((....(((.....(((((((.((((.(((.((((((.....((((.......))))....))))))...)))...))))...)))))))....))).))))......

Structure

------    aaca   uuUCA       --A    --G   --U      cucaa    aa 
      gcga    ucu     AGUGACA   GGAA   AUC   Ugauaa     augc  u
      ||||    |||     |||||||   ||||   |||   ||||||     ||||  g
      cguu    aga     ucacugu   ccuu   uag   acuauu     uacg  c
accuua    ---a   -cuua       aua    gaa   uuu      -ucag    ga 

Annotation confidence Not enough data

Genome context

chr7: 22083207-22083316 [-]

Mature mtr-miR5258

• Accession: MIMAT0021258
• Description: Medicago truncatula mtr-miR5258 mature miRNA
• Sequence: 14 - UCAAGUGACAAGGAAGAUCUU - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010