Stem-loop mtr-MIR399r

Accession

MI0018374

Description

Medicago truncatula mtr-MIR399r precursor miRNA

Gene family

MIPF0000015; MIR399

Literature search

9 open access papers mention mtr-MIR399r
(22 sentences)

Sequence

gugcauuacugggcaaugacuuuuuuuggcaguaguucacuugaucuuucagaugaugcaaacaaacucacUGCCAAAGAAGAUUUGCCCCGcaauucacuc
(((.(((.(.((((((....(((((((((((((((((...((((((........))).)))...)))).)))))))))))))..)))))).).))).)))..

Structure

--   c   a u      ugac             -    cac   -   uuu 
  gug auu c gggcaa    uuuuuuuggcagu aguu   uug auc   c
  ||| ||| | ||||||    ||||||||||||| ||||   ||| |||    
  cac uaa G CCCGUU    GAAGAAACCGUca ucaa   aac uag   a
cu   u   c C      --UA             c    aca   g   uag 

Annotation confidence Not enough data

Genome context

chr8: 24012653-24012754 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from mtr-MIR399r

Mature mtr-miR399r

• Accession: MIMAT0021271
• Description: Medicago truncatula mtr-miR399r mature miRNA
• Sequence: 72 - UGCCAAAGAAGAUUUGCCCCG - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010