miRBase entry: mtr-MIR5274a

Stem-loop mtr-MIR5274a


Accession
MI0018414
Description
Medicago truncatula mtr-MIR5274a precursor miRNA
Gene family
MIPF0001311; MIR5274


Sequence

guaugCGUUCUACAAUAUGACGGAGUGUAaaugccuauguaucaagcuaugguaagucugauacuuaggcauuuacacuccgucauauugcggaacgcauacc
(((((((((((.(((((((((((((((((((((((((.((((((.(((......))).)))))).))))))))))))))))))))))))).))))))))))).

Structure
-           A                         u      a   au 
 guaugCGUUCU CAAUAUGACGGAGUGUAaaugccua guauca gcu  g
 ||||||||||| ||||||||||||||||||||||||| |||||| |||   
 cauacgcaagg guuauacugccucacauuuacggau cauagu uga  g
c           c                         u      c   au 


Annotation confidence Not enough data
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Genome context
chr4: 12634031-12634133 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mtr-MIR5274a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mtr-miR5274a

Accession MIMAT0021311
Description Medicago truncatula mtr-miR5274a mature miRNA
Sequence 6 - CGUUCUACAAUAUGACGGAGUGUA - 29
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010