miRBase entry: mtr-MIR5280

Stem-loop mtr-MIR5280


Accession
MI0018422
Description
Medicago truncatula mtr-MIR5280 precursor miRNA


Sequence

aacaggcuuacuaugagaaacggcucaauccaucacgggccguuuuuaauuacaacccauuaauaaauaucauuuuauuuagggcaauauuguaucaauucuaauuauaauauugcacugaauaaaaggauacuuauuaaugggcugUAAUUAGAAACGGGCCGUGAUGGGuugggcuguu
..................((((((((((((((((((((.(((((((((((((((.(((((((((((.((((.((((((((((.(((((((((((...........))))))))))).)))))))))).)))).))))))))))).))))))))))))))).))))))))))))))))))))

Structure
aacaggcuuacuaugaga                    g               a           a    a          g           ucaa 
                  aacggcucaauccaucacgg ccguuuuuaauuaca cccauuaauaa uauc uuuuauuuag gcaauauugua    u
                  |||||||||||||||||||| ||||||||||||||| ||||||||||| |||| |||||||||| |||||||||||    u
                  uugucggguuGGGUAGUGCC GGCAAAGAUUAAUgu ggguaauuauu auag aaaauaaguc cguuauaauau    c
------------------                    G               c           c    g          a           uaau 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr7: 18599955-18600135 [-]

Database links

Mature mtr-miR5280

Accession MIMAT0021319
Description Medicago truncatula mtr-miR5280 mature miRNA
Sequence 148 - UAAUUAGAAACGGGCCGUGAUGGG - 171
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010