Stem-loop mtr-MIR5281a

Accession

MI0018423

Description

Medicago truncatula mtr-MIR5281a precursor miRNA

Gene family

MIPF0000875; MIR2593

Sequence

uugugacauacucccuucgguccuauuuacaagagaaauuugacuuuuuagauacauuaaauaauguauguaucuaaucaagaaucuaaaccaaauacauaaauuauuuaauguaucuaaaaaguaaauuguCUCUUGUAAAUAGGAUCGGAGGGAguguauauacuc
..(((..(((((((((((((((((((((((((((((((((((.((((((((((((((((((((((.(((((((.....................))))))).)))))))))))))))))))))))))))).)))))))))))))))))))))))))))))...)))..

Structure

uu   -ac                             -      a                      g       cuaaucaag 
  gug   auacucccuucgguccuauuuacaagaga aauuug cuuuuuagauacauuaaauaau uauguau         a
  |||   ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||         a
  cau   ugugAGGGAGGCUAGGAUAAAUGUUCUCu uuaaau gaaaaaucuauguaauuuauua auacaua         u
cu   aua                             g      -                      a       aaccaaauc 

Annotation confidence Not enough data

Genome context

chr8: 20624516-20624683 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR5281a

Mature mtr-miR5281a

• Accession: MIMAT0021320
• Description: Medicago truncatula mtr-miR5281a mature miRNA
• Sequence: 133 - CUCUUGUAAAUAGGAUCGGAGGGA - 156
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010