Stem-loop mtr-MIR5281c

Accession

MI0018425

Description

Medicago truncatula mtr-MIR5281c precursor miRNA

Gene family

MIPF0000382; MIR1122

Sequence

ggauauauauuacuaccuccgguccuauuuauaagagaaauuuaggucaacaaaagugaauguauuuggacugaauuuuuaacuagauacaucaacuuuuguugacccaaaauucUCUUAUAAAUAGGACCGGAGGGAGuacuccaguuuau
(((.......((((.((((((((((((((((((((((((.(((.(((((((((((((..((((((((((.............))))))))))..))))))))))))).))).)))))))))))))))))))))))).)))).))).......

Structure

-------   uauauau    a                        a   a             ga          acuga 
       gga       uacu ccuccgguccuauuuauaagagaa uuu ggucaacaaaagu  auguauuugg     a
       |||       |||| |||||||||||||||||||||||| ||| |||||||||||||  ||||||||||     u
       ccu       auGA GGAGGCCAGGAUAAAUAUUCUcuu aaa ccaguuguuuuca  uacauagauc     u
uauuuga   ------c    G                        a   c             ac          aauuu 

Annotation confidence Not enough data

Genome context

chr8: 4438315-4438466 [+]

Mature mtr-miR5281c

• Accession: MIMAT0021322
• Description: Medicago truncatula mtr-miR5281c mature miRNA
• Sequence: 116 - UCUUAUAAAUAGGACCGGAGGGAG - 139
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010