miRBase entry: mtr-MIR5281f

Stem-loop mtr-MIR5281f


Accession
MI0018428
Description
Medicago truncatula mtr-MIR5281f precursor miRNA
Gene family
MIPF0000382; MIR1122


Sequence

uauaguauccuacuaccuccgguucuauuuauaagagaaauuuaggucaacaaaagugaauguauuuggacugaauuuuuaacuagauauaucaacuuuuguugacccaaaauucUCUUAUAAAUAGGACCGGAGGGAGuacuuuuuuagga
.......(((((((.((((((((((((((((((((((((.(((.(((((((((((((..((((((((((.............))))))))))..))))))))))))).))).)))))))))))))))))))))))).)))........))))

Structure
uauagua    --------   a                        a   a             ga          acuga 
       uccu        acu ccuccgguucuauuuauaagagaa uuu ggucaacaaaagu  auguauuugg     a
       ||||        ||| |||||||||||||||||||||||| ||| |||||||||||||  ||||||||||     u
       agga        uGA GGAGGCCAGGAUAAAUAUUCUcuu aaa ccaguuguuuuca  uauauagauc     u
-------    uuuuuuca   G                        a   c             ac          aauuu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr4: 38919901-38920052 [+]

Database links

Mature mtr-miR5281f

Accession MIMAT0021325
Description Medicago truncatula mtr-miR5281f mature miRNA
Sequence 116 - UCUUAUAAAUAGGACCGGAGGGAG - 139
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010