Stem-loop mtr-MIR2590i

Accession

MI0018436

Description

Medicago truncatula mtr-MIR2590i precursor miRNA

Literature search

1 open access papers mention mtr-MIR2590i
(1 sentences)

Sequence

37520 reads, 348.0 reads per million, 111 experiments

ucaagaaaauuucaAGAAUGACAUGGCAGAAUAAUCACccuuagauuuuaucaagaaauagucaugaaauuaauguuaaccaauaaaaucucagccuggccgaaaaucaugggaugguggguguuauguauuuuuuuuuuaugaaagauuaauAAAUGAGACUGAAAUCUAAAGGUgauuauuguaccaugucauucuuaaauuuuucuuau
..(((((((.((.(((((((((((((.(.((((((((((.(((((((((((((.((.....)).)))............(((.....((((((................))))))..)))((.((((.((((..(((((....)))))..)))).)))).)))))))))))).)))))))))).).))))))))))))).)).)))))))..

Structure

uc       u  c             C G          c          ucaagaaauagucaugaaauuaauguuaaccaauaaaaucucagccuggccgaaaaucaugggauggugg  g    g    uu     u 
  aagaaaa uu aAGAAUGACAUGG A AAUAAUCACc uuagauuuua                                                                      gu uuau uauu  uuuuu a
  ||||||| || ||||||||||||| | |||||||||| ||||||||||                                                                      || |||| ||||  |||||  
  uucuuuu aa uucuuacuguacc u uuauuagUGG AAUCUAAAGU                                                                      CA AGUA Auaa  agaaa u
ua       u  a             a g          A          ----------------------------------------------------------------------  G    A    uu     g 

Annotation confidence Low

Genome context

chr8: 29483055-29483266 [-]

Mature mtr-miR2590i-5p

• Accession: MIMAT0021333
• Description: Medicago truncatula mtr-miR2590i-5p mature miRNA
• Sequence: 15 - AGAAUGACAUGGCAGAAUAAUCAC - 38
• Evidence: experimental ; Illumina [1]

Mature mtr-miR2590i-3p

• Accession: MIMAT0055197
• Description: Medicago truncatula mtr-miR2590i-3p mature miRNA
• Sequence: 154 - AAAUGAGACUGAAAUCUAAAGGU - 176
• Evidence: experimental ; unknown

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010