Stem-loop sequence mtr-MIR2590j

Accession

MI0018437 (change log)

Description

Medicago truncatula miR2590j stem-loop

Gene family

MIPF0000834; MIR2590

Literature search

1 open access papers mention mtr-MIR2590j
(1 sentences)

Stem-loop

   auc      au                  g          c          ---   agaaa     -----cu    uu     -    caa  aa      ----g   g 
5'    aagaaa  uucaagaaugacauggca aauaaucacc uuagauuuua   uca     uaguc       gaaa  aaugc uagc   ua  aucuca     ucu g
      ||||||  |||||||||||||||||| |||||||||| ||||||||||   |||     |||||       ||||  ||||| ||||   ||  ||||||     |||  
3'    uucuuu  aaguucuuacuguaccgu uuauuagugg aaucuaaagu   agu     auuag       uuuu  uuaug auug   gu  uggggu     agg c
   aua      cu                  g          a          cag   aaaua     aaaguau    uu     u    uag  gg      acuaa   c 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr7: 35647909-35648121 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0018437

Mature sequence mtr-miR2590j

• Accession: MIMAT0021334
• Sequence: 16 - agaaugacauggcagaauaaucac - 39
• Evidence: experimental; Illumina [1]

References

1. PMID:21571671 "Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis" Devers EA, Branscheid A, May P, Krajinski F Plant Physiol. 156:1990-2010(2011).