Stem-loop mtr-MIR5284g

Accession

MI0018444

Description

Medicago truncatula mtr-MIR5284g precursor miRNA

Gene family

MIPF0001277; MIR5284

Sequence

auuucauauucuuucacuuuuggucccucuuuucaucaagucaauagaaucugcauaaauuacguacauguaguuucaaauuccuuccacuuuugguccuuguaauuucagauuccuccacuuuuggucccucauuuuacgugccauguaugcagauucugcuuacgugguggaauGAGGGACCAAAAGUGGAAGAAUCUgaaau
((((((.((((((((((((((((((((((.((((((((.((...(((((((((((((((((((......))))))..................((((...(((((..(.((...((.........))...)).)..))))).))))..)))))))))))))...)).)))))))).)))))))))))))))))))))).))))))

Structure

      u                      u        a  caa             aauuacguacauguaguuucaaauuccuuccacuuu    ccu     uu c  auu  ucc 
auuuca auucuuucacuuuuggucccuc uuucauca gu   uagaaucugcaua                                    uggu   uguaa  u ag   cc   a
|||||| |||||||||||||||||||||| |||||||| ||   |||||||||||||                                    ||||   |||||  | ||   ||   c
uaaagU UAAGAAGGUGAAAACCAGGGAG aagguggu ca   gucuuagacguau                                    accg   gcauu  a uc   gg   u
      C                      u        g  uuc             ----------------------------------gu    --u     uu c  ccu  uuu 

Annotation confidence Not enough data

Genome context

chr7: 34765741-34765945 [-]

Mature mtr-miR5284g

• Accession: MIMAT0021341
• Description: Medicago truncatula mtr-miR5284g mature miRNA
• Sequence: 177 - GAGGGACCAAAAGUGGAAGAAUCU - 200
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010