miRBase entry: mtr-MIR5285a

Stem-loop mtr-MIR5285a


Accession
MI0018446
Description
Medicago truncatula mtr-MIR5285a precursor miRNA
Gene family
MIPF0001292; MIR5285


Sequence

gagauUGGGACUUUGGGUAGAAUUAGGCGagagacuuauucuuguaacccauugauaucucuuuuguaaaguu
(((((.....(..((((((((((.((........)).)))))....)))))..)..)))))............

Structure
------------     UGGGA UU     ----     U  GCG 
            gagau     C  UGGGU    AGAAU AG   a
            |||||     |  |||||    ||||| ||    
            cucua     g  accca    ucuua uc   g
uugaaauguuuu     ---ua uu     augu     u  aga 


Annotation confidence Not enough data
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Genome context
chr1: 27254843-27254915 [-]

Database links

Mature mtr-miR5285a

Accession MIMAT0021343
Description Medicago truncatula mtr-miR5285a mature miRNA
Sequence 6 - UGGGACUUUGGGUAGAAUUAGGCG - 29
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010