miRBase entry: mtr-MIR5291b

Stem-loop mtr-MIR5291b


Accession
MI0018458
Description
Medicago truncatula mtr-MIR5291b precursor miRNA
Gene family
MIPF0001293; MIR5291


Sequence

gauggaucaaauccaauccauuaacaaauauuuuuGUUUGAUGGAUGGAUUGGAUGGAUuuuauagug
...(((((..((((((((((((..((((((....))))))...)))))))))))).))))).......

Structure
----gau     aa            -aa      u 
       ggauc  auccaauccauu   caaaua u
       |||||  ||||||||||||   ||||||  
       uuUAG  UAGGUUAGGUAG   GUUUGu u
gugauau     -G            GUA      u 


Annotation confidence Not enough data
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Genome context
chr5: 13770442-13770509 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mtr-MIR5291b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mtr-miR5291b

Accession MIMAT0021355
Description Medicago truncatula mtr-miR5291b mature miRNA
Sequence 36 - GUUUGAUGGAUGGAUUGGAUGGAU - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010