miRBase entry: mtr-MIR5294b

Stem-loop mtr-MIR5294b


Accession
MI0018464
Description
Medicago truncatula mtr-MIR5294b precursor miRNA
Gene family
MIPF0001303; MIR5294


Sequence

gagagguccaugcccuuagccguuuaacuauuuaaacgucaucccaucagacgguuaaacuauucugaacugguGCUAAACGGAAUGAGGGUAGUCAUcccucuccu
((((((....((((((((.(((((((((((((((..((((.........))))..))))...........))))..)))))))..))))))))......))))))..

Structure
--      --ucca        -g       --    -----------    aa    auc 
  gagagg      ugcccuua  ccguuua  acua           uuua  cguc   c
  ||||||      ||||||||  |||||||  ||||           ||||  ||||   c
  cucucc      AUGGGAGU  GGCAAAU  uggu           aaau  gcag   a
uc      cUACUG        AA       CG    caagucuuauc    ug    acu 


Annotation confidence Not enough data
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Genome context
chr3: 21791743-21791849 [+]

Database links

Mature mtr-miR5294b

Accession MIMAT0021361
Description Medicago truncatula mtr-miR5294b mature miRNA
Sequence 75 - GCUAAACGGAAUGAGGGUAGUCAU - 98
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010