Stem-loop mtr-MIR5295c

Accession

MI0018468

Description

Medicago truncatula mtr-MIR5295c precursor miRNA

Gene family

MIPF0001287; MIR5295

Sequence

uuccuaaucgguugguaguuuaugaacagggccguccuuaagaauucggaggcUCGGCUCUGGGAAUGAAAAGAGGCcagugauaaa
......((((..((((..(((((...((((((((.((((.........))))..))))))))...))))).....)))).))))...

Structure

uuccua    gu    ---ag     gaa        -u    aag 
      aucg  uggu     uuuau   cagggccg  ccuu   a
      ||||  ||||     |||||   ||||||||  ||||   a
      uagu  acCG     AAGUA   GUCUCGGC  ggag   u
---aaa    -g    GAGAA     AGG        Uc    gcu 

Annotation confidence Not enough data

Genome context

chr5: 7413973-7414059 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR5295c

Mature mtr-miR5295c

• Accession: MIMAT0021365
• Description: Medicago truncatula mtr-miR5295c mature miRNA
• Sequence: 54 - UCGGCUCUGGGAAUGAAAAGAGGC - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010