Stem-loop sly-MIR5303

Accession

MI0018480

Description

Solanum lycopersicum sly-MIR5303 precursor miRNA

Gene family

MIPF0001432; MIR5303

Literature search

3 open access papers mention sly-MIR5303
(5 sentences)

Sequence

guugcucggacucuccaaaaauguugccaaacccgugucugauccuucaaaaauacauuauuuuuguaggacaccuauggaccUUUUUGAAGAGUUCGAGCAAC
((((((((((((((.((((((.((........(((((..((.((((.((((((((...)))))))).))))))..))))))).)))))).))))))))))))))

Structure

              c      u  ugccaaac     uc  a    u        c 
guugcucggacucu caaaaa gu        ccgug  ug uccu caaaaaua  
|||||||||||||| |||||| ||        |||||  || |||| |||||||| a
CAACGAGCUUGAGA GUUUUU ca        gguau  ac agga guuuuuau  
              A      c  --------     cc  -    u        u 

Annotation confidence Not enough data

Genome context

chr4: 11973314-11973417 [+]

Mature sly-miR5303

• Accession: MIMAT0020767
• Description: Solanum lycopersicum sly-miR5303 mature miRNA
• Sequence: 84 - UUUUUGAAGAGUUCGAGCAAC - 104
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21443685
   Profiling of short RNAs during fleshy fruit development reveals stage-specific sRNAome expression patterns
   "Mohorianu I, Schwach F, Jing R, Lopez-Gomollon S, Moxon S, Szittya G, Sorefan K, Moulton V, Dalmay T"
   "Plant J (2011) 67:232-246