miRBase entry: sly-MIR5304

Stem-loop sly-MIR5304


Accession
MI0018481
Description
Solanum lycopersicum sly-MIR5304 precursor miRNA
Gene family
MIPF0001713; MIR5304

Literature search
2 open access papers mention sly-MIR5304
(2 sentences)

Sequence

ucuaauuuagauccauggugcaguugcucauUCAAUGCUACAUACUCAUCCCcacaacuuucaucucacguucaaaagaugaaaguuauagagaugaguauggugcauuggauguguggccauaccaugggugauguuaga
((((((....((((((((((..(((((.((((((((((..((((((((((.(...(((((((((((..........)))))))))))...).))))))))))..)))))))))).)))))..))))))))))...))))))

Structure
      uuag          ca     u          UA          C cac           cacg 
ucuaau    auccauggug  guugc cauUCAAUGC  CAUACUCAUC C   aacuuucaucu    u
||||||    ||||||||||  ||||| ||||||||||  |||||||||| |   |||||||||||     
agauug    uggguaccau  cggug guagguuacg  guaugaguag g   uugaaaguaga    u
      -uag          ac     u          ug          a aua           aaac 


Annotation confidence Not enough data
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Genome context
chr1: 97204436-97204576 [+]

Database links

Mature sly-miR5304

Accession MIMAT0020768
Description Solanum lycopersicum sly-miR5304 mature miRNA
Sequence 32 - UCAAUGCUACAUACUCAUCCC - 52
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21443685
    Profiling of short RNAs during fleshy fruit development reveals stage-specific sRNAome expression patterns
    "Mohorianu I, Schwach F, Jing R, Lopez-Gomollon S, Moxon S, Szittya G, Sorefan K, Moulton V, Dalmay T"
    "Plant J (2011) 67:232-246