Stem-loop sequence isc-mir-5306

Accession

MI0018485 (change log)

Description

Ixodes scapularis miR-5306 stem-loop

Literature search

1 open access papers mention isc-mir-5306
(1 sentences)

Stem-loop

   gccggauuacca       u          ac      u   aa     uaggg 
5'             gcuugcc ggggaggagc  cgcgug uac  cuucg     a
               ||||||| ||||||||||  |||||| |||  |||||     g
3'             ugaacgg uccuuccucg  gugcac aug  gaggc     a
   ccgcugcgacgg       c          ca      u   -a     cggua 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Iscaw1): DS717196: 247001-247110 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0018485

Mature sequence isc-miR-5306

• Accession: MIMAT0021376
• Sequence: 66 - agaguaucacgugacgcuccuu - 87
• Evidence: not experimental

References

1. PMID:21699734 "Evolutionary conserved microRNAs are ubiquitously expressed compared to tick-specific miRNAs in the cattle tick Rhipicephalus (Boophilus) microplus" Barrero RA, Keeble-Gagnere G, Zhang B, Moolhuijzen P, Ikeo K, Tateno Y, Gojobori T, Guerrero FD, Lew-Tabor A, Bellgard M BMC Genomics. 12:328(2011).