Stem-loop isc-mir-5310

Accession

MI0018490

Description

Ixodes scapularis isc-mir-5310 precursor miRNA

Literature search

1 open access papers mention isc-mir-5310
(1 sentences)

Sequence

gaaggcaccuuggacgagcggcguuuggucggacuacaccgugagggugcuccuggagucgaggUGUAGUCUGGCAGAAACGUCGguugucuggggaggcgcauucggcg
((((((.((((((((((.((((((((.(((((((((((((.((((((....)))....))).)))))))))))))..)))))))).))))))))))..)).).)))....

Structure

----   - -  -a          g        -g             g   ----   u 
    gaa g gc  ccuuggacga cggcguuu  gucggacuacacc uga    ggg g
    ||| | ||  |||||||||| ||||||||  ||||||||||||| |||    |||  
    cuu c cg  ggggucuguu GCUGCAAA  CGGUCUGAUGUgg gcu    ucc c
gcgg   a g  ga          g        GA             a   gagg   u 

Annotation confidence Low

Genome context

DS649088: 485358-485467 [-]

Mature isc-miR-5310

• Accession: MIMAT0021381
• Description: Ixodes scapularis isc-miR-5310 mature miRNA
• Sequence: 65 - UGUAGUCUGGCAGAAACGUCG - 85
• Evidence: not_experimental

References

1. PubMed ID: 21699734
   Evolutionary conserved microRNAs are ubiquitously expressed compared to tick-specific miRNAs in the cattle tick Rhipicephalus (Boophilus) microplus
   Barrero RA, Keeble-Gagnère G, Zhang B, Moolhuijzen P, Ikeo K, Tateno Y, Gojobori T, Guerrero FD, Lew-Tabor A, Bellgard M
   BMC Genomics (2011) 12:328