Stem-loop isc-mir-5311

Accession

MI0018491

Description

Ixodes scapularis isc-mir-5311 precursor miRNA

Sequence

guuccucugcggcagacguggugcccgggauugcaguccaagcugcggccgcccccggccaggAGCCCGCCGCUUGGACUGGGAUcgagggcaccaccgcuucggcagag
....((((((.(.((..(((((((((..((((.((((((((((.((((..((.((......)).)))))).)))))))))).))))..)))))))))..)).).))))))

Structure

guuc      g c  ac         gg    g          u    cc  c  cg 
    cucugc g ag  guggugccc  gauu caguccaagc gcgg  gc cc  g
    |||||| | ||  |||||||||  |||| |||||||||| ||||  || ||   
    gagacg c uc  caccacggg  cUAG GUCAGGUUCG CGCC  CG gg  c
----      g u  gc         ag    G          C    --  A  ac 

Annotation confidence Not enough data

Genome context

DS708614: 70265-70374 [-]

Mature isc-miR-5311

• Accession: MIMAT0021382
• Description: Ixodes scapularis isc-miR-5311 mature miRNA
• Sequence: 64 - AGCCCGCCGCUUGGACUGGGAU - 85
• Evidence: not_experimental

References

1. PubMed ID: 21699734
   Evolutionary conserved microRNAs are ubiquitously expressed compared to tick-specific miRNAs in the cattle tick Rhipicephalus (Boophilus) microplus
   Barrero RA, Keeble-Gagnère G, Zhang B, Moolhuijzen P, Ikeo K, Tateno Y, Gojobori T, Guerrero FD, Lew-Tabor A, Bellgard M
   BMC Genomics (2011) 12:328