miRBase entry: isc-mir-5312

Stem-loop isc-mir-5312


Accession
MI0018492
Description
Ixodes scapularis isc-mir-5312 precursor miRNA

Literature search
1 open access papers mention isc-mir-5312
(1 sentences)

Sequence

agcagagucauguugcacacagaUGGCUGAACGUUGUUAUGCGUgugacaugugaaagugcgcguaauaauguuccguuguuugugagcgacauugcguuguccca
.((((.((.(((((((.((((((((((.((((((((((((((((...((........)))))))))))))))))).)))))))))).))))))).)).))))....

Structure
---a    a  c       a          U                gug  aug 
    gcag gu auguugc cacagaUGGC GAACGUUGUUAUGCGU   ac   u
    |||| || ||||||| |||||||||| ||||||||||||||||   ||    
    uguu cg uacagcg guguuuguug cuuguaauaaugcgcg   ug   g
accc    g  u       a          c                ---  aaa 


Annotation confidence Not enough data
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Genome context
DS900645: 19149-19254 [+]

Database links

Mature isc-miR-5312

Accession MIMAT0021383
Description Ixodes scapularis isc-miR-5312 mature miRNA
Sequence 24 - UGGCUGAACGUUGUUAUGCGU - 44
Evidence not_experimental

References

  1. PubMed ID: 21699734
    Evolutionary conserved microRNAs are ubiquitously expressed compared to tick-specific miRNAs in the cattle tick Rhipicephalus (Boophilus) microplus
    Barrero RA, Keeble-Gagnère G, Zhang B, Moolhuijzen P, Ikeo K, Tateno Y, Gojobori T, Guerrero FD, Lew-Tabor A, Bellgard M
    BMC Genomics (2011) 12:328