miRBase entry: isc-mir-5313

Stem-loop isc-mir-5313


Accession
MI0018493
Description
Ixodes scapularis isc-mir-5313 precursor miRNA


Sequence

aaacacacuuuucgucgauguugaauuuucugccggcggcacguuucccguucucgagagcaaacuugaucaccuuuaacUUGUAGCCAGCCGUGUAGCUAUUCAGGuac
....................((((((...((((((((((((((((....((..(((((......)))))..))....)))..)).))).)))).))))..))))))....

Structure
aaacacacuuuucgucgaug      uuu    -    -   -  --   uccc  uc     ag 
                    uugaau   cugc cggc ggc ac  guu    gu  ucgag  c
                    ||||||   |||| |||| ||| ||  |||    ||  |||||   
                    GACUUA   GAUG GCCG CCG UG  caa    ca  aguuc  a
----------------cauG      -UC    U    A   A  UU   uuuc  cu     aa 


Annotation confidence Not enough data
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Genome context
DS968311: 1340-1449 [-]

Database links

Mature isc-miR-5313

Accession MIMAT0021384
Description Ixodes scapularis isc-miR-5313 mature miRNA
Sequence 81 - UUGUAGCCAGCCGUGUAGCUAUUCAGG - 107
Evidence not_experimental

References

  1. PubMed ID: 21699734
    Evolutionary conserved microRNAs are ubiquitously expressed compared to tick-specific miRNAs in the cattle tick Rhipicephalus (Boophilus) microplus
    Barrero RA, Keeble-Gagnère G, Zhang B, Moolhuijzen P, Ikeo K, Tateno Y, Gojobori T, Guerrero FD, Lew-Tabor A, Bellgard M
    BMC Genomics (2011) 12:328