Stem-loop isc-mir-5313

Accession

MI0018493

Description

Ixodes scapularis isc-mir-5313 precursor miRNA

Sequence

aaacacacuuuucgucgauguugaauuuucugccggcggcacguuucccguucucgagagcaaacuugaucaccuuuaacUUGUAGCCAGCCGUGUAGCUAUUCAGGuac
....................((((((...((((((((((((((((....((..(((((......)))))..))....)))..)).))).)))).))))..))))))....

Structure

aaacacacuuuucgucgaug      uuu    -    -   -  --   uccc  uc     ag 
                    uugaau   cugc cggc ggc ac  guu    gu  ucgag  c
                    ||||||   |||| |||| ||| ||  |||    ||  |||||   
                    GACUUA   GAUG GCCG CCG UG  caa    ca  aguuc  a
----------------cauG      -UC    U    A   A  UU   uuuc  cu     aa 

Annotation confidence Not enough data

Genome context

DS968311: 1340-1449 [-]

Mature isc-miR-5313

• Accession: MIMAT0021384
• Description: Ixodes scapularis isc-miR-5313 mature miRNA
• Sequence: 81 - UUGUAGCCAGCCGUGUAGCUAUUCAGG - 107
• Evidence: not_experimental

References

1. PubMed ID: 21699734
   Evolutionary conserved microRNAs are ubiquitously expressed compared to tick-specific miRNAs in the cattle tick Rhipicephalus (Boophilus) microplus
   Barrero RA, Keeble-Gagnère G, Zhang B, Moolhuijzen P, Ikeo K, Tateno Y, Gojobori T, Guerrero FD, Lew-Tabor A, Bellgard M
   BMC Genomics (2011) 12:328