Stem-loop sequence isc-mir-5313

Accession

MI0018493 (change log)

Description

Ixodes scapularis miR-5313 stem-loop

Stem-loop

   aaacacacuuuucgucgaug      uuu    -    -   -  --   uccc  uc     ag 
5'                     uugaau   cugc cggc ggc ac  guu    gu  ucgag  c
                       ||||||   |||| |||| ||| ||  |||    ||  |||||   
3'                     gacuua   gaug gccg ccg ug  caa    ca  aguuc  a
   ----------------caug      -uc    u    a   a  uu   uuuc  cu     aa 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Iscaw1): DS968311: 1340-1449 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0018493

Mature sequence isc-miR-5313

• Accession: MIMAT0021384
• Sequence: 81 - uuguagccagccguguagcuauucagg - 107
• Evidence: not experimental

References

1. PMID:21699734 "Evolutionary conserved microRNAs are ubiquitously expressed compared to tick-specific miRNAs in the cattle tick Rhipicephalus (Boophilus) microplus" Barrero RA, Keeble-Gagnere G, Zhang B, Moolhuijzen P, Ikeo K, Tateno Y, Gojobori T, Guerrero FD, Lew-Tabor A, Bellgard M BMC Genomics. 12:328(2011).