miRBase entry: rmi-mir-5327

Stem-loop rmi-mir-5327


Accession
MI0018509
Description
Rhipicephalus microplus rmi-mir-5327 precursor miRNA


Sequence

gagcgucauaaaaaacgaauugAAAUGGUUCGUGAGGCUGCCaaaaaaacaagaacgaguaaugggauuuuagcagacuuacaaggaccaaaaauucguauaucaaguuuuaagc
..............(((((((....(((((((((((.((((.((((...((...........))...)))).)))).)))))..))))))..)))))))................

Structure
--gagcgucauaaaaa       gAAA      --     G    C    aaa  agaa 
                acgaauu    UGGUUC  GUGAG CUGC aaaa   ca    c
                |||||||    ||||||  ||||| |||| ||||   ||    g
                ugcuuaa    accagg  cauuc gacg uuuu   gu    a
cgaauuuugaacuaua       --aa      aa     a    a    agg  aaug 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature rmi-miR-5327

Accession MIMAT0021400
Description Rhipicephalus microplus rmi-miR-5327 mature miRNA
Sequence 23 - AAAUGGUUCGUGAGGCUGCC - 42
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21699734
    Evolutionary conserved microRNAs are ubiquitously expressed compared to tick-specific miRNAs in the cattle tick Rhipicephalus (Boophilus) microplus
    Barrero RA, Keeble-Gagnère G, Zhang B, Moolhuijzen P, Ikeo K, Tateno Y, Gojobori T, Guerrero FD, Lew-Tabor A, Bellgard M
    BMC Genomics (2011) 12:328