Stem-loop rmi-mir-5330

Accession

MI0018512

Description

Rhipicephalus microplus rmi-mir-5330 precursor miRNA

Sequence

ucgaggacgauagucgcacgaccugagccaucugcugggccucuaucaccuccgagagggaguuaugcaugccCAAUUGUAGGAGCUUCUCGGUGcuagugugg
......(((.(((.(((.(((...((((..((((((((((.........((((.....))))........)))))...))))).)))).))))))))).)))..

Structure

ucgagg   a   u   a   ccu    ca     ---     cucuaucac    g 
      acg uag cgc cga   gagc  ucugc   ugggc         cucc a
      ||| ||| ||| |||   ||||  |||||   |||||         |||| g
      ugu auc GUG GCU   UUCG  GGAUG   ACccg         gagg a
----gg   g   -   -   --C    -A     UUA     -uacguauu    g 

Annotation confidence Not enough data

Genome context

Unknown

Mature rmi-miR-5330

• Accession: MIMAT0021403
• Description: Rhipicephalus microplus rmi-miR-5330 mature miRNA
• Sequence: 74 - CAAUUGUAGGAGCUUCUCGGUG - 95
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21699734
   Evolutionary conserved microRNAs are ubiquitously expressed compared to tick-specific miRNAs in the cattle tick Rhipicephalus (Boophilus) microplus
   Barrero RA, Keeble-Gagnère G, Zhang B, Moolhuijzen P, Ikeo K, Tateno Y, Gojobori T, Guerrero FD, Lew-Tabor A, Bellgard M
   BMC Genomics (2011) 12:328