miRBase entry: rmi-mir-5332

Stem-loop rmi-mir-5332


Accession
MI0018514
Description
Rhipicephalus microplus rmi-mir-5332 precursor miRNA


Sequence

gggcaauaucaggccuucggacUCGUCCUGUCGGCGUCAAGUCGUAGCAgccuucggccauccacucggcguaauagcgcuugacaugcgcuuugaagggcuuguuaagc
((((........))))...(((..(((((...((((.((.((((.(((.((.....(((........)))......))))))))).))))))....)))))..)))....

Structure
gggcaauaucaggccuucg   UC     -GUC    U  A    U   A  -cuucg   auc 
                   gac  GUCCU    GGCG CA GUCG AGC gc      gcc   c
                   |||  |||||    |||| || |||| ||| ||      |||    
                   uug  cggga    ucgc gu cagu ucg cg      cgg   a
---------------cgaa   uu     aguu    -  a    -   -  auaaug   cuc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature rmi-miR-5332

Accession MIMAT0021405
Description Rhipicephalus microplus rmi-miR-5332 mature miRNA
Sequence 23 - UCGUCCUGUCGGCGUCAAGUCGUAGCA - 49
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21699734
    Evolutionary conserved microRNAs are ubiquitously expressed compared to tick-specific miRNAs in the cattle tick Rhipicephalus (Boophilus) microplus
    Barrero RA, Keeble-Gagnère G, Zhang B, Moolhuijzen P, Ikeo K, Tateno Y, Gojobori T, Guerrero FD, Lew-Tabor A, Bellgard M
    BMC Genomics (2011) 12:328