Stem-loop rmi-mir-5335

Accession

MI0018517

Description

Rhipicephalus microplus rmi-mir-5335 precursor miRNA

Sequence

ccucugcguacaugguggcuguuucguuggguuuuugugcgcgagccucaaucagUUGCUGUGCGCGAUCCCGUCGGUCcguguucaaaaauguggcgagg
((((.((.(((((..((((((..(((.((((...((((((((.(((..(.....)..))))))))))).)))).)))..)).).)))...)))))))))))

Structure

    u  g     -gg   - -  uu   u    uuu        g   cu a 
ccuc gc uacau   ugg c ug  ucg uggg   uugugcgc agc  c a
|||| || |||||   ||| | ||  ||| ||||   |||||||| |||  | u
ggag cg gugua   acu g gc  GGC GCCC   AGCGCGUG UCG  g c
    -  -     aaa   u u  CU   U    --U        -   UU a 

Annotation confidence Not enough data

Genome context

Unknown

Mature rmi-miR-5335

• Accession: MIMAT0021408
• Description: Rhipicephalus microplus rmi-miR-5335 mature miRNA
• Sequence: 56 - UUGCUGUGCGCGAUCCCGUCGGUC - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21699734
   Evolutionary conserved microRNAs are ubiquitously expressed compared to tick-specific miRNAs in the cattle tick Rhipicephalus (Boophilus) microplus
   Barrero RA, Keeble-Gagnère G, Zhang B, Moolhuijzen P, Ikeo K, Tateno Y, Gojobori T, Guerrero FD, Lew-Tabor A, Bellgard M
   BMC Genomics (2011) 12:328