miRBase entry: osa-MIR5337a

Stem-loop osa-MIR5337a


Accession
MI0018519
Description
Oryza sativa osa-MIR5337a precursor miRNA

Literature search
3 open access papers mention osa-MIR5337a
(4 sentences)

Sequence

9 reads, 12 reads per million, 1 experiments
ccuucauuucAAAUUACUUGUCGUUCUAGCUuuguccuuaaacauguauaucuuugaccaucaauuuuuaaaaacucauaugguuuaacaucauaugauuuuuuuuuagauucacugacaaauacuuuaauaaauacaacucauauuuugaacuauacggauuucuaaaaauugauggucaaagauauacaugcuugacuuaggacaaagcuagaacaaaaaguauuugaguacuaga
.((....(((((((.((((...(((((((((((((((((((.((((((((((((((((((((((((((((.(((.((.((((((((((....((((((......((((......................))))......)))))).)))))))))).)).))).)))))))))))))))))))))))))))).)))....))))))))))))))))...)))))))))))....)).

Structure
c  ucau       U    GUC                ----   a                            a   c  a          cauc      uuuuuu    gauucacuga 
 cu    uucAAAU ACUU   GUUCUAGCUuuguccu    uaa cauguauaucuuugaccaucaauuuuua aaa uc uaugguuuaa    auauga      uuua          c
 ||    ||||||| ||||   ||||||||||||||||    ||| |||||||||||||||||||||||||||| ||| || ||||||||||    ||||||      ||||           
 ga    gaguuua ugaa   caagaucgaaacagga    guu guacauauagaaacugguaguuaaaaau uuu gg auaucaaguu    uauacu      aaau          a
a  ucau       -    aaa                uuca   c                            c   a  c          ---u      caacau    aauuucauaa 


Annotation confidence Not enough data
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Genome context
Chr4: 5621964-5622201 [+]

Database links

Mature osa-miR5337a

Accession MIMAT0021410
Description Oryza sativa osa-miR5337a mature miRNA
Sequence 11 - AAAUUACUUGUCGUUCUAGCU - 31
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 21791435
    Differential expression of the microRNAs in superior and inferior spikelets in rice (Oryza sativa)
    "Peng T, Lv Q, Zhang J, Li J, Du Y, Zhao Q"
    "J Exp Bot (2011) 62:4943-4954