Stem-loop asu-mir-1

Accession

MI0018528

Description

Ascaris suum asu-mir-1 precursor miRNA

Gene family

MIPF0000038; mir-1

Literature search

1 open access papers mention asu-mir-1
(4 sentences)

Sequence

uucuguugcauCGUACUUCUUUACAUCGCCAUAcugguauuucaaagagcuaUGGAAUGUAAAGAAGUAUGUAguuacugaa
.((.((.((..(((((((((((((((..(((((((............)).))))).)))))))))))))))..)).)).)).

Structure

u  u  u  au               CG     -  gguau 
 uc gu gc  CGUACUUCUUUACAU  CCAUA cu     u
 || || ||  |||||||||||||||  ||||| ||      
 ag ca ug  GUAUGAAGAAAUGUA  GGUau ga     u
a  u  u  AU               -A     c  gaaac 

Annotation confidence Not enough data

Genome context

Unknown

Mature asu-miR-1-5p

• Accession: MIMAT0021423
• Description: Ascaris suum asu-miR-1-5p mature miRNA
• Sequence: 12 - CGUACUUCUUUACAUCGCCAUA - 33
• Evidence: experimental ; Illumina [1]

Mature asu-miR-1-3p

• Accession: MIMAT0021424
• Description: Ascaris suum asu-miR-1-3p mature miRNA
• Sequence: 53 - UGGAAUGUAAAGAAGUAUGUA - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21685128
   Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
   "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
   "Genome Res (2011) 21:1462-1477