miRBase entry: asu-mir-43d

Stem-loop asu-mir-43d


Accession
MI0018533
Description
Ascaris suum asu-mir-43d precursor miRNA


Sequence

ggcaguAACCCGAUGUGGCUGCGAUACUguuugcacauggccgagUAUCACAGUCUUAUCCGGUCAccgccucuu
(((.((.(((.((((.(((((.((((((....((.....))..)))))).))))).)))).))).)).)))....

Structure
----   a  A   C    U     C      guuu  a 
    ggc gu ACC GAUG GGCUG GAUACU    gc c
    ||| || ||| |||| ||||| ||||||    || a
    ccg cA UGG CUAU CUGAC CUAUga    cg u
uucu   c  C   C    U     A      --gc  g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature asu-miR-43d-5p

Accession MIMAT0021433
Description Ascaris suum asu-miR-43d-5p mature miRNA
Sequence 7 - AACCCGAUGUGGCUGCGAUACU - 28
Evidence experimental
Illumina [1]

Mature asu-miR-43d-3p

Accession MIMAT0021434
Description Ascaris suum asu-miR-43d-3p mature miRNA
Sequence 46 - UAUCACAGUCUUAUCCGGUCA - 66
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21685128
    Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
    "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
    "Genome Res (2011) 21:1462-1477