Stem-loop asu-mir-43e

Accession

MI0018534

Description

Ascaris suum asu-mir-43e precursor miRNA

Gene family

MIPF0001285; mir-43_2

Sequence

ugcacagcacgCGGUAGCAGAGGUGCUGCGAUACGcuguguaguaucaUAUCACAGUUCUUUGCUACCUCgugcuucgca
(((..((((((.(((((((((((.((((.((((.(((....)))....)))).))))))))))))))).))))))..)))

Structure

   ac      C           U    C    ---C   g 
ugc  agcacg GGUAGCAGAGG GCUG GAUA    Gcu u
|||  |||||| ||||||||||| |||| ||||    |||  
acg  ucgugC CCAUCGUUUCU UGAC CUAU    uga g
   cu      U           -    A    acua   u 

Annotation confidence Not enough data

Genome context

Unknown

Mature asu-miR-43e-5p

• Accession: MIMAT0021435
• Description: Ascaris suum asu-miR-43e-5p mature miRNA
• Sequence: 12 - CGGUAGCAGAGGUGCUGCGAUACG - 35
• Evidence: experimental ; Illumina [1]

Mature asu-miR-43e-3p

• Accession: MIMAT0021436
• Description: Ascaris suum asu-miR-43e-3p mature miRNA
• Sequence: 49 - UAUCACAGUUCUUUGCUACCUC - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21685128
   Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
   "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
   "Genome Res (2011) 21:1462-1477