miRBase entry: asu-mir-43c-1

Stem-loop asu-mir-43c-1


Accession
MI0018543
Description
Ascaris suum asu-mir-43c-1 precursor miRNA
Gene family
MIPF0001285; mir-43_2


Sequence

ugcguacagcagcgCGUGGCAAGGAUACUGCGAUGCGucauguugcaucgUAUCACAGUUCUUUGUCACCCUuugcaucacgca
(((((...((((.(.((((((((((.((((.((((((...........)))))).)))))))))))))).).))))...)))))

Structure
     aca    c C          U    C      ucau 
ugcgu   gcag g GUGGCAAGGA ACUG GAUGCG    g
|||||   |||| | |||||||||| |||| ||||||    u
acgca   cguu C CACUGUUUCU UGAC CUAUgc    u
     cua    U C          -    A      uacg 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature asu-miR-43c-1-5p

Accession MIMAT0021453
Description Ascaris suum asu-miR-43c-1-5p mature miRNA
Sequence 15 - CGUGGCAAGGAUACUGCGAUGCG - 37
Evidence experimental
Illumina [1]

Mature asu-miR-43c-3p

Accession MIMAT0021454
Description Ascaris suum asu-miR-43c-3p mature miRNA
Sequence 51 - UAUCACAGUUCUUUGUCACCCU - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21685128
    Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
    "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
    "Genome Res (2011) 21:1462-1477