Stem-loop asu-mir-43c-2

Accession

MI0018544

Description

Ascaris suum asu-mir-43c-2 precursor miRNA

Gene family

MIPF0001285; mir-43_2

Sequence

acagcggcgCGUGGCAAAGAUACUGCGAUGCGccgcguuacaucgUAUCACAGUUCUUUGUCACCCUuugcuuuacg
..(((((.(.((((((((((.((((.((((((...........)))))).)))))))))))))).).))))).....

Structure

---ac     c C          U    C      ccgc 
     agcgg g GUGGCAAAGA ACUG GAUGCG    g
     ||||| | |||||||||| |||| ||||||    u
     ucguu C CACUGUUUCU UGAC CUAUgc    u
gcauu     U C          -    A      uaca 

Annotation confidence Not enough data

Genome context

Unknown

Mature asu-miR-43c-3p

• Accession: MIMAT0021454
• Description: Ascaris suum asu-miR-43c-3p mature miRNA
• Sequence: 46 - UAUCACAGUUCUUUGUCACCCU - 67
• Evidence: experimental ; Illumina [1]

Mature asu-miR-43c-2-5p

• Accession: MIMAT0022671
• Description: Ascaris suum asu-miR-43c-2-5p mature miRNA
• Sequence: 10 - CGUGGCAAAGAUACUGCGAUGCG - 32
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21685128
   Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
   "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
   "Genome Res (2011) 21:1462-1477