miRBase entry: asu-mir-44a

Stem-loop asu-mir-44a


Accession
MI0018545
Description
Ascaris suum asu-mir-44a precursor miRNA
Gene family
MIPF0000132; mir-44


Sequence

cagacgugaaaCUGGAUGUCUCUCGCAGUCAUAcgguauauagaguucuaUGACUAGAGACACAUUCAGCUuggcggcug
(((.(((.((.((((((((.((((..(((((((.((..........))))))))).)))).)))))))).)).))).)))

Structure
   a   g  a        C    GC       c  uaua 
cag cgu aa CUGGAUGU UCUC  AGUCAUA gg    u
||| ||| || |||||||| ||||  ||||||| ||     
guc gcg uU GACUUACA AGAG  UCAGUau cu    a
   g   g  C        C    -A       -  ugag 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature asu-miR-44a-5p

Accession MIMAT0021455
Description Ascaris suum asu-miR-44a-5p mature miRNA
Sequence 12 - CUGGAUGUCUCUCGCAGUCAUA - 33
Evidence experimental
Illumina [1]

Mature asu-miR-44a-3p

Accession MIMAT0021456
Description Ascaris suum asu-miR-44a-3p mature miRNA
Sequence 51 - UGACUAGAGACACAUUCAGCU - 71
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21685128
    Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
    "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
    "Genome Res (2011) 21:1462-1477